BITS Meetings' Virtual Library:
Abstracts from Italian Bioinformatics Meetings from 1999 to 2013


766 abstracts overall from 11 distinct proceedings





Display Abstracts | Brief :: Order by Meeting | First Author Name
1. Alberti S, Trerotola M, Emerson A, Rossi E
An automated approach to the in-silico identification of chimeric mRNAs
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
2. Ambesi-Impiombato A, Bansal M, Rispoli R, Liò P, Di Bernardo D
TFBSs prediction by integration of genomic, evolutionary, and gene expression data
Meeting: BITS 2006 - Year: 2006
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Topic: Recognition of genes and regulatory elements
3. Angeletti M, Baldoncini A, Cannata N, Corradini F, Culmone R, Forcato C, Mattioni M, Merelli E, Piergallini R
Orion: a spatial Multi Agent System framework for Computational Cellular Dynamics of metabolic pathways
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
4. Angeletti M, Bartocci E, Merelli E
A workflow for an orthology-based prediction of protein-protein interaction
Meeting: BITS 2006 - Year: 2006
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Topic: Computational proteomics
5. Annese V, Latiano A, Palmieri O, D'Addabbo A, Maglietta R, Liuni S, Pesole G, Ancona N
Multiple Single Nucleotide Polymorphisms analysis of candidate genes in Inflammatory Bowel Diseases by using RLS classifiers
Meeting: BITS 2006 - Year: 2006
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Topic: Computational genetics
6. Anselmo A, Iacono M, Felice B, Guffanti A, Pesole G
Computational detection of cancer-specific splice sites
Meeting: BITS 2006 - Year: 2006
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Topic: Molecular sequence analysis
7. Arcangeli C, Gianese G, Paparcone R, Sperandei M, Cantale C, Galeffi P, Rosato V
Setting a procedure for in silico evaluation of immunoconjugates for cancer therapy
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
8. Armano G, Manconi A, Vargiu E
Automatic Extraction and Classification of Bioinformatics Publications through a MultiAgent System
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
9. Armano G, Saba M, Vargiu E
A Graphical Tool for Protein Sequences Analysis
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
10. Attimonelli M, Accetturo M, Jastrzebski JP, Lascaro D, Santamaria M, Zanchetta De Pasquale L
HmtDB, the Human Mitochondrial Genomic Resource: developments in 2006
Meeting: BITS 2006 - Year: 2006
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Topic: Genomics
11. Barbarini N, Magni P, Bellazzi R
A new approach for the analysis of mass spectrometry data for biomarker discovery
Meeting: BITS 2006 - Year: 2006
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Topic: Computational proteomics
12. Bartocci E, Cannata N, Corradini F, Merelli E, Milanesi L, Romano P
A multilayer architecture to support bioinformaticians of today and tomorrow
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
13. Bartocci E, Corradini F, Merelli E, Scortichini L
BioWMS: a web based Workflow Management System for Bioinformatics
Meeting: BITS 2006 - Year: 2006
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Topic: Molecular sequence analysis
14. Bartocci E, Merelli E, Möller S
A DAS view of agent-based workflows
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
15. Beltrame F, Corradi L, Milanesi L, Papadimitropoulos A, Porro I, Scaglione S, Schenone A, Torterolo L, Viti F
A Grid based solution for Management and Analysis of Microarrays in distributed Bone Marrow Stem Cells experiments
Meeting: BITS 2006 - Year: 2006
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Topic: Microarray design and data analysis
16. Bernaschi M, Castiglione F, Ferranti A, Gavrila C, Cesareni G
Dynamic simulation of protein interaction networks
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
17. Boccia A, Silvestre A, Paolella G
Genome-wide prediction of PCR products based on termodynamic parameters
Meeting: BITS 2006 - Year: 2006
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Topic: Molecular sequence analysis
18. Bosotti R, Locatelli G, Healy S, Scacheri E, Calogero RA, Isacchi A
Multiplatform approach for robust gene identification
Meeting: BITS 2006 - Year: 2006
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Topic: Microarray design and data analysis
19. Brick K, Pizzi E
Construction of compositionally biased amino acid substitution matrices to improve annotation of Plasmodium falciparum proteins
Meeting: BITS 2006 - Year: 2006
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Topic: Molecular sequence analysis
20. Brilli M, Fondi M, Fani R
Analysis of operon genes using a compendium of expression data
Meeting: BITS 2006 - Year: 2006
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Topic: Gene expression
21. Brilli M, Mengoni A, Fani R
Network analysis of plasmids encoded proteins
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
22. Brozzi A, Pelicci PG, Luzi L
Natural cis-antisense of human tumor suppressor genes
Meeting: BITS 2006 - Year: 2006
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Topic: Recognition of genes and regulatory elements
23. Cameron G, Clark D, Beltrame F, Coatrieux JL, Del Hoyo Barbolla E, Martin-Sanchez F, Milanesi L, Tollis Ioannis G, Van der Lei J
SYMBiomatics: Synergies in Medical Informatics and Bioinformatics
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
24. Cannata N, Corradini F, Di Berardini MR, Mariani F, Merelli E, Trivelli M, Ubaldi M
Modelling and simulation of the E.coli-Lambda interactions
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
25. Cannata N, Corradini F, La Terza A, Merelli E, Miceli C
Modelling of the eukariotic heat-shock response with probabilistic timed automata
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
26. Cannata N, Corradini F, Leoni L, Merelli E, Piersigilli F
A resource ontology for bioinformatics Resourceomes
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
27. Cannataro M, Veltri P
MS-Analyzer: Composing and Executing Preprocessing and Data Mining Services for Proteomics Applications
Meeting: BITS 2006 - Year: 2006
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Topic: Computational proteomics
28. Capobianco E
Entropic Embedding in High-Dimensional Biological Systems
Meeting: BITS 2006 - Year: 2006
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Topic: Gene networks
29. Cappadona S, Pattini L, Levander F, James P, Cerutti S
A systematic approach for noise characterization in ESI-Q-TOF spectra
Meeting: BITS 2006 - Year: 2006
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Topic: Computational proteomics
30. Caprera A, Cosentino C, Viotti A, Stella A, Milanesi L, Lazzari B
ESTuber db: a tool for Tuber borchii EST sequence management
Meeting: BITS 2006 - Year: 2006
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Topic: Molecular sequence analysis
31. Capriotti E, Fariselli P, Rossi I, Casadio R
Improving the quality of the predictions of protein stability changes upon mutation using a multi-class predictor
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
32. Carreras M, Bosotti R
A new interactive and fully automated tool for parsing BLAST output
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
33. Casadio R, Fariselli P, Margara L, Filippo M, Vassura M
Improving the selection of close-native protein structures in decoy sets using a graph theory-based approach
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
34. Castrignanò T, D'Onorio De Meo P, Carrabino D, Orsini M, Floris M, Tramontano A
The MEPS server for identifying protein conformational epitopes
Meeting: BITS 2006 - Year: 2006
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Topic: Combinatorial libraries and drug design
35. Chiappori F, Ferrario MG, Gaiji N, Fantucci P
Design of Selective Compounds for the Estrogen Receptors: A Molecular Docking and Machine Learning Study
Meeting: BITS 2006 - Year: 2006
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Topic: Combinatorial libraries and drug design
36. Chiarugi D, Degano P, Marangoni R
A systems biology approach to the functional screening of genomes
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
37. Chiusano ML, D'Agostino N, Traini A, Raimondo E, Aversano M, Frusciante L
An integrated platform for solanaceae genomics
Meeting: BITS 2006 - Year: 2006
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Topic: Structural and functional genomics
38. Cordero F, Saviozzi S, Di Renzo MF, Olivero M, Cirenei N, Calogero RA
Microarray cross-platforms differential expression validation
Meeting: BITS 2006 - Year: 2006
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Topic: Microarray design and data analysis
39. Corsi C, Ferragina P, Marangoni R
The bioPrompt-box: an ontology-based clustering tool for searching in biological databases
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
40. Costantini S, Colonna G, Facchiano AM
Amino acid propensities for secondary structures
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
41. Cozzuto L, Petrillo M, Silvestro G, Di Nocera PP, Paolella G
Systematic identification of stem-loop containing sequence families in bacterial genomes
Meeting: BITS 2006 - Year: 2006
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Topic: Structural and functional genomics
42. D'Agostino N, Aversano M, Frusciante L, Chiusano ML
TOMATEST DB: a database of expressed sequences to mine on Tomato functional genomics
Meeting: BITS 2006 - Year: 2006
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Topic: Gene expression
43. D'Ursi P, Marino F, Caprera A, Milanesi L, Faioni E, Rovida E
3D-protein C mutation database: integration of structural, functional and clinical data of natural protein C mutants
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
44. Damasco C, Grassi E, Ala U, Gatti M, Di Cunto F
Identification of new putative mitotic genes through coexpression analysis
Meeting: BITS 2006 - Year: 2006
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Topic: Gene expression
45. Di Camillo B, Toffolo G, Cobelli C
Significance analysis of microarray transcript levels in time series experiments
Meeting: BITS 2006 - Year: 2006
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Topic: Microarray design and data analysis
46. Emerson A, Rossi E
Immunogrid - The European Virtual Human Immune System Project
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
47. Farina L, Marcatili P, Uva P, Busiello V, Morelli G, Ruberti I
Dynamic Regulation of Gene Expression
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
48. Fariselli P, Bartoli L, Calabrese R, Mita DG, Casadio R
A computational approach for detecting peptidases and their specific inhibitors at the genome level
Meeting: BITS 2006 - Year: 2006
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Topic: Computational proteomics
49. Ferrario MG, Chiappori F, Gaiji N, Fantucci P
Alpha and Beta Estrogen Receptors: Molecular Modelling and Conformational Analysis through Molecular Dynamics
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
50. Ferraro E, Via A, Ausiello G, Helmer-Citterich M
A novel structure-based encoding for machine-learning applied to the prediction of SH3 domain specificity
Meeting: BITS 2006 - Year: 2006
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Topic: Computational proteomics
51. Ferrazzi F, Sebastiani P, Kohane IS, Ramoni MF, Bellazzi R
Bayesian approaches for reverse engineering of cellular networks: a performance evaluation on simulated data
Meeting: BITS 2006 - Year: 2006
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Topic: Gene networks
52. Ferrè F, Clote P, Ausiello G, Via A, Cesareni G, Helmer-Citterich M
Mining the human interactome through gene expression time series analysis
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
53. Finocchiaro G, Mancuso FM, Muller H
Publime: a new tool for meta-analysis of cancer-related microarray experiments
Meeting: BITS 2006 - Year: 2006
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Topic: Structural and functional genomics
54. Finocchiaro G, Parise P, Di Ninni V, Francois S, Carro MS, Muller H
Intragenic antisense transcription correlates with long UTRs
Meeting: BITS 2006 - Year: 2006
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Topic: Gene expression
55. Fogolari F, Pieri L, Bortolussi L, Dovier A
A statistical empirical energy function for proteins
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
56. Fondi M, Brilli M, Fani R
On the origin and evolution of biosynthetic pathways: integrating microarray data with gene structure and organization
Meeting: BITS 2006 - Year: 2006
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Topic: Molecolar evolution
57. Fontana P, De Mattè L, Cestaro A, Segala C, Velasco R, Toppo S
GORetriever: a novel Gene Ontology annotation tool based on semantic similaritiy for knowledge discovery in database
Meeting: BITS 2006 - Year: 2006
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Topic: Molecular sequence analysis
58. Gallimbeni R, Falconi M, Desideri A
HServ and SNPly: a software infrastructure and a web agent for linking information on genetic variation
Meeting: BITS 2006 - Year: 2006
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Topic: Recognition of genes and regulatory elements
59. Gissi C, San Mauro D, Pesole G, Zardoya R
Mitochondrial phylogeny of Anura (Amphibia): a case study of congruent phylogenetic reconstruction using amino acid and nucleotide characters
Meeting: BITS 2006 - Year: 2006
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Topic: Molecolar evolution
60. Horner DS, Pesole G
Protein contact prediction with correlated mutation analysis using mixed physiochemical constraints
Meeting: BITS 2006 - Year: 2006
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Topic: Recognition of genes and regulatory elements
61. Horner DS, Re M, Nasi C, Pesole G
Improving the capacity of the CSTMiner algorithm to correctly classify conserved sequences
Meeting: BITS 2006 - Year: 2006
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Topic: Molecular sequence analysis
62. Iacono M, Mignone F, Anselmo A, Pesole G
ESTissue: A novel method to identify gene expression profile EST based
Meeting: BITS 2006 - Year: 2006
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Topic: Gene expression
63. Iannelli F, Griggio F, Pesole G, Gissi C
Reshaping the mtDNA circle: new insights from four newly sequenced ascidian genomes
Meeting: BITS 2006 - Year: 2006
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Topic: Molecolar evolution
64. Lanave C, De Grassi A, Saccone C
Comparative Genomics of OXPHOS gene families
Meeting: BITS 2006 - Year: 2006
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Topic: Molecolar evolution
65. Maglietta R, D'Addabbo A, Piepoli A, Perri F, Liuni S, Pesole G, Ancona N
Selection and ranking of genes relevant for cancer diagnosis based on the classification ability of their expression pattern
Meeting: BITS 2006 - Year: 2006
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Topic: Gene expression
66. Malusa F, Gonzalez Couto E, Rossi M, Bakker A, Kremer A, Terstappen GC
The Wnt Pathway as in silico disease model for neuro-oncology
Meeting: BITS 2006 - Year: 2006
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Topic: Gene networks
67. Marabotti A, Festa M, D'Acierno A, Facchiano A
GALT-Prot database: a database of the structural features of GALT enzyme and its mutations
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
68. Marino F, Morra G, D'Ursi P, Salvi E, Milanesi L, Faioni E, Rovida E
Molecular dynamics and docking simulation of the G216D mutation in the catalytic domain of activated protein C
Meeting: BITS 2006 - Year: 2006
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Topic: Molecolar evolution
69. Masseroli M, Bellistri E, Pinciroli F
Logistic regression of controlled functional annotations of classified genes
Meeting: BITS 2006 - Year: 2006
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Topic: Structural and functional genomics
70. Masseroli M, Franceschini A, Maffezzoli A, Pinciroli F
Genomic annotation and statistical analysis of protein families and domains for functional investigation of gene lists
Meeting: BITS 2006 - Year: 2006
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Topic: Genomics
71. Menconi G, Dionisi F, Marangoni R
Extraction of recurrent motifs synthetic genomic sequences via dictionary-based compression
Meeting: BITS 2006 - Year: 2006
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Topic: Computational genetics
72. Mereghetti P, Papaleo E, Fantucci P, Tiranti V, Zeviani M, Mineri R, De Gioia L
Evaluation of protein models quality using neural networks. Application to the ETHE1 protein
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
73. Merelli I, D'Agostino D, Clematis A, Milanesi L
Analysis system for Protein Surface Recognition
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
74. Mignone F, Re M, Horner DS, Pesole G
A new strategy to identify novel genes and gene isoforms: whole genome comparison of human and mouse
Meeting: BITS 2006 - Year: 2006
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Topic: Recognition of genes and regulatory elements
75. Milanesi L, Alfieri R, Merelli I
Developement of a data mining system for human cell cycle data analysis
Meeting: BITS 2006 - Year: 2006
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Topic: Gene networks
76. Milanesi L, Andreas G, Arlandini C, Beltrame F, Bishop C, Breton V, Ernest P, Jacq N, Legre Y, Liò P, Liuni S, Mazzuccato M, Maggi G, Meloni G, Merelli I, Morra G, Orro A, Porro I, Sanger M, Shuai S, Trombetti G
BioinfoGRID: EU Bioinfomatics GRID Project
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
77. Mittempergher L, Picelli S, Feltrin E, Colluto L, Nofrate V, Caldara F, Millino C, Campanaro S, Valle G
Contribution to the ontology and system biology of muscle genes and application to microarray expression studies
Meeting: BITS 2006 - Year: 2006
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Topic: Microarray design and data analysis
78. Mizugushi K, Sele M, Cubellis MV
Environment specific substitution tables for thermophilic proteins
Meeting: BITS 2006 - Year: 2006
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Topic: Molecolar evolution
79. Morra G, Milanesi L
Molecular dynamics simulations of TBP complexed with diverse TATA variants
Meeting: BITS 2006 - Year: 2006
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Topic: Computational proteomics
80. Mosca R, Schneider TR
Alignment of Homologous Protein Structures in the Presence of Domain Motions
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
81. Muselli M, Romeo F, Pfeffer U
Clustering techniques for classification of splice sites of human exons
Meeting: BITS 2006 - Year: 2006
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Topic: Recognition of genes and regulatory elements
82. Mutarelli M, Scafoglio C, Cicatiello L, Colonna G, Facchiano A, Weisz A
Getting the most out of comparative microarray data analysis: analysis of the estrogen-responsive transcriptome from breast cancer cells with four different microarray platforms
Meeting: BITS 2006 - Year: 2006
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Topic: Microarray design and data analysis
83. Nicodemi M, Prisco A
A computer model of X-inactivation
Meeting: BITS 2006 - Year: 2006
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Topic: Gene expression
84. Orro A, Armano G, Vargiu E, Milanesi L
FunGenAgent: An Agent-Based Approach for Workflow Composition in Homology Functional Genomics
Meeting: BITS 2006 - Year: 2006
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Topic: Genomics
85. Pandini A, Mauri G, Bonati L
A new procedure to detect similarities among distant homologous proteins based on the comparison of domain flexibilities
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
86. Papaleo E, Pandini A, De Gioia L, Bonati L
A fast conformational sampling approach to investigate enzymatic cold-adaptation mechanisms
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
87. Papaleo E, Riccardi L, Pasi M, Gonella Diaza R, Smalas AO, Brandsdal BO, Fantucci P, De Gioia L
Comparative molecular dynamics simulations of homologous enzymes to investigate enzymatic cold-adaptation: a family-centred point of view
Meeting: BITS 2006 - Year: 2006
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Topic: Protein structure
88. Paparcone R, Casilli R, Melchionna S, Marongiu A, Palazzari P, Rosato V
IMAGE: a new tool for the discovery of Transcription Factors binding sites
Meeting: BITS 2006 - Year: 2006
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Topic: Recognition of genes and regulatory elements
89. Pavesi G, Valentini G, Mauri G, Pesole G
Motif based classification of coexpressed genes
Meeting: BITS 2006 - Year: 2006
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Topic: Recognition of genes and regulatory elements
90. Peluso D, Via A, Ausiello G, Helmer-Citterich M
Mapping OMIM mutated residues on PDB protein structures
Meeting: BITS 2006 - Year: 2006
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Topic: Structural and functional genomics
91. Persico M, Kiemer L, Cesareni G
Assembling the Yeast Interactome
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
92. Piccolis M, Medico E
The genomic signature for in vitro-induced invasive growth is enriched in genes correlated with human cancer aggressiveness
Meeting: BITS 2006 - Year: 2006
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Topic: Microarray design and data analysis
93. Pizzi E, Bultrini E, Silvestrini F, Alano P
Genomic analysis of gene structure and expression of Plasmodium falciparum rifins
Meeting: BITS 2006 - Year: 2006
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Topic: Genomics
94. Pozzoli U, Menozzi G, Cereda M, Comi GP, Sironi M
Expression levels and gene function influence transposon occurrence in mammalian introns
Meeting: BITS 2006 - Year: 2006
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Topic: Molecolar evolution
95. Raimondo E, Chiusano ML
Pattern Discovery: a web based interface for exhaustive analyses on multiple biological sequences
Meeting: BITS 2006 - Year: 2006
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Topic: Molecular sequence analysis
96. Rambaldi D, Felice B, Praz V, Bucher P, Guffanti A
Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data
Meeting: BITS 2006 - Year: 2006
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Topic: Microarray design and data analysis
97. Rampone S, Aloisio A, Izzo V
FPGA implementation of a greedy scheme for Bioinformatics applications
Meeting: BITS 2006 - Year: 2006
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Topic: Computational genetics
98. Remondini D, Neretti N, Milanesi L, Tatar M, Sedivy JM, Franceschi C, Castellani GC
Correlation analysis of gene expression time series at multiple scales: from the entire genome to metabolic and signalling pathways
Meeting: BITS 2006 - Year: 2006
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Topic: Computational systems biology
99. Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L
Biowep: a workflow enactment portal for bioinformatics applications
Meeting: BITS 2006 - Year: 2006
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Topic: Miscellanea
100. Sacchi L, Larizza C, Magni P, Bellazzi R
Precedence temporal networks for the representation of temporal relationships in gene expression data
Meeting: BITS 2006 - Year: 2006
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Topic: Gene networks
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